Riffomonas Project

R tools in readr for reading in fixed width files and other formats (CC249)

Cleaning and manipulating data with the tidyverse: dplyr, readr, and stringr in action (CC121)

How to write bash scripts: Automating steps in data analysis to make them more reproducible (CC018)

Tidy is in the eye of the beholder: How to use pivot_wider and pivot_longer (and kable)(CC040)

Regular expressions in sed & grep: powerful tools for searching and modifying files in bash (CC022)

How to set up git for a bioinformatics project: using version control with git and GitHub (CC014)

Easy ways to go back in your git commit history with RStudio (CC153)

3 ways to run commands in mothur: interactively, with a batch file, and at the command line (CC046)

R tools in readr for reading in fixed width files and other formats (CC249)

Using nest, mutate, map, and unnest in R to analyze data frames within data frames (CC056)

Using inner_join and anti_join in R to merge different types of data for similar entities (CC032)

How to create a violin plot with ggplot2 in R with geom_violin and geom_dotplot (CC092)

How to set the order and value of factors in R using factor and fct_reorder (CC148)

For loops in R to make all vs. all comparisons: Strategies for making them more efficient (CC053)

Using foreach to create a for loop and dir to exctract the directory from a path with make (CC048)

Stylizing the appearance of facet labels with ggplot2's facet_wrap (CC236)

Using the archive R package to read and write tar.gz and other archive files (CC250)

Creating publication quality figures in R with ggplot2 (CC066)

Adding built in data to an R package (CC294)

Base R's paste and paste0 functions: how to use the sep and collapse arguments (CC285)

Creating a barplot with error bars using ggplot2 (CC088)

Revisiting and critiquing a scatterplot in R with ggplot2 (CC078)

How to automate data analysis with R scripts: Scripting for reproducibility (CC027)

Writing C++ code in R using the Rcpp package: Overcoming bottleneck in all v all comparison (CC055)

Using dplyr's join functions in R to filter and merge data frames (CC164)

How to create a heatmap in R with geom_tile and geom_text from ggplot2 (CC105)

Using the plotly R package to create an interactive scatter plot (CC084)

How to structure an R markdown document to optimize the rendering speed (CC064)

Refactoring R code to make it faster and more memory efficient (CC281)

Benchmarking methods for reading text files in R (CC290)

How to create a vignette for an R package (CC297)

Renaming our R package, updating RStudio and R, organizing code, and passing Check! (CC280)

The tutorial you need to maximize your use data frames in R (CC277)

How to create a data only R package with devtools (CC296)

Accessing values from data frames, data tables, tibbles, matrices, and vectors (CC278)

Using Roxygen2 to document functions in an R package (CC293)

Comparing duckdb and duckplyr to tibbles, data.tables, and data.frames (CC279)

Incorporating C++ code in an R package with Rcpp and devtools (CC288)

Four ways to set a color in R using ggplot2 and how to read hexadecimal (CC139)

Using a pipe at the command line with bash, tar, gzip, and more! (CC251)

How to write if else statements in bash: Adding logic to scripts to take different paths (CC021)

How to split files from the command line and integrate bash and R scripts (CC252)

Live coding in R: No edits! Pat calculates the z-score (CC256)

Creating a heatmap map with geom_tile from ggplot2 in R (CC258)

A tutorial for writing functions in R (CC177)

How to add maps to a ggplot2 figure in R (CC264)

How to create a grouped plot of jittered data with the ggplot2 R package (CC108)

Changing the row and column names of matrices with tools from base R (CC176)

Closing issues on GitHub when building R packages with test driven development (CC303)

Tutorial on using adonis from the vegan R package (CC081)

Inserting references into R markdown documents for a scientific paper (CC072)